Tuesday Exercise 2.1: Hardware Differences in the OSG¶
The goal of this exercise is to compare hardware differences between our local cluster (CHTC here at UW–Madison) and an OSG glidein pool. Specifically, we will look at how easy it is to get access to resources in terms of the amount of memory that is requested. This will not be a very careful study, but should give you some idea of one way in which the pools are different.
In the first two parts of the exercise, you will submit a bunch of jobs that differ only in how much memory each one requests; we call this a parameter sweep, in that we are testing many possible values of a parameter. We will request memory from 1–16 GB, doubling the memory each time. One set of jobs will be submitted locally, and the other, identical set of jobs will be submitted to OSG. You will check the queue periodically to see how many jobs have completed and how many are still waiting to run.
Part 1: Checking on the availability of memory (locally)¶
In this first part, you will create the submit file for both the local and OSG jobs, then submit the local set.
Yet another queue syntax¶
Yesterday, you learned about the
queue statement and some of the different ways it can be invoked to submit multiple jobs. Similar to the
queue from statement to submit jobs based on lines from a specific file, you can use
queue in to submit jobs based on a list directly from your submit file:
queue <# of jobs> <variable> in ( <item 1> <item 2> <item 3> ... )
For example, to submit 6 jobs that sleep for
15 seconds, you could write a submit file like the following:
executable = /bin/sleep queue 2 arguments in ( 5 10 15 )
Try submitting this file yourself and checking the jobs that end up in the queue with
Create the submit files¶
To create our parameter sweep, we will create one submit file with multiple queue statements and change the value of our parameter (
request_memory) for each batch of jobs.
- If not already, log on to
- Create and change into a new subdirectory called
tuesday-2.1– doing things this way will make Part 2 much easier
- Create a submit file that is named
sleep.suband that executes the command =/bin/sleep 30=\
If you do not remember all of the submit statements to write this file, or just to go faster, find a similar submit file from yesterday, copy and rename it here, and make sure the argument to
30(although the exact value does not matter for the test).
- Use the
queue insyntax to submit 25 jobs requesting 2, 4, 8, 16, and 32GB of memory, e.g. you should have 5 jobs requesting 2GB, 5 jobs requesting 4GB, etc.
- Save the submit file and exit your editor
- Submit your jobs
Monitoring the local jobs¶
Every few minutes, run
condor_q and see how your sleep jobs are doing. To easily see how many jobs of each type you have left, run the following command:
%UCL_PROMPT_SHORT% condor_q <span style="background-color: #D1CAF2;"><Cluster ID></span> -af RequestMemory | sort -n | uniq -c
The numbers in the left column are the number of jobs left of that type and the number on the right is the amount of memory you requested in MB. Consider making a little table like the one below to track progress.
|Memory||Remaining #1||Remaining #2||Remaining #3|
In the meantime, between checking on your local jobs, start Part 2 – taking a break every few minutes to record progress on your local jobs.
Part 2: Checking on the availability of memory (remotely)¶
For the second part of the exercise, you will just copy over the directory from part 1 on
osg-learn.chtc.wisc.edu and resubmit your jobs to the OSG. You should have plenty of experience copying over files with
scp and submitting them to the OSG so I won't provide instructions here. If you get stuck at any point in this process, refer to exercise 1.2.
Monitoring the remote jobs¶
As you did in part 1, use
condor_q to track how your sleep jobs are doing. You can move onto the next exercise but keep tracking the status of your jobs. After you are done with the rest of the exercises, come back to this exercise, and move onto part 3
Part 3: Analyzing the results¶
Now that you've finished the other exercise, how many jobs have completed locally? How many have completed remotely?
Due to the dynamic nature of the remote pool, the OSG may have noticed the demand for higher memory jobs and leased more high memory slots for our pool. That being said, 8GB+ slots are a high-demand, low-availability resource in the OSG so it's unlikely that all of your 8GB+ jobs matched and ran to completion. On the other hand, the local cluster has plenty of 8GB+ slots so all your jobs have a high chance of running.
Once completed, move onto the next exercise: Software Differences in the OSG